Category Archives: Awesome biotech

Eri Gentry – Open Science Conference (OpenPCR cameo!)

Hi all, I’m not sure what you all are up to on a Friday night. But I’m watching twitter, thinking about OpenPCR, and lo and behold, Eri’s talk from the Open Science Conference (OSCON) flew by. It’s great, and I recommend you check it out, and OpenPCR makes a live appearance. Video below!

Join Eri Gentry, founder of BioCurious, the world’s first “hackerspace for biology” on a journey from garage biology to community lab.

For the first time, serious biological research can be done at home. With the decreasing costs of biotech equipment came a growing community of amateur biologists. The most common name for this group is “DIYbio” (Do-It-Yourself biology), a 2,000 plus group of scientists, students, engineers, artists and entpreneurs, whose interests range from wanting to learn how genetic testing works to wanting to completely overhaul the ivory tower that is scientific research.

Full description at OSCON.com

 

Also, Paul + friends at the Melbourne Hackerspace in Australia are assembling 1 or 2 OpenPCR kits as you read this. Paul mentioned a UStream/Google+ discussion, so stay tuned! Check out Twitter (http://twitter.com/#!/search/openpcr) and discuss on the OpenPCR Google Group.

 

 

Freakonomics: For Biology

OpenPCR PCR MachineHave you read the book Freakonomics? Readers gushed over the logical beauties presented in Freakonomics; tying “broken windows and buildings left in disarray” to a rise in “gang violence”, and other examples tying together two otherwise un-connected events. I hear a similar tune in the following article. How might an effort to treat sick livestock cause $24,000,000,000 ($24 bln) in damage and killing 48,0000 people?

Continue reading

How Species Save Our Lives

We are coming to an age when technologies for quickly and quantitatively identifying a new species will be in the reach of many more people. Technologies like OpenPCR, DNA barcoding, mail-order DNA sequencing, and DNA barcoding. But technology is useless without people putting it to use.  ”Why” might someone like you want to identify new species? I came across a few answers this morning in the New York Times. According to the article, we have new species to thank (and the people who stumbled across them) for the following…

Continue reading

iGEM 2010: Synthetic biology and more!

iGEM (the international Genetically Engineered Machines Competition) this year consisted of ~130 fantastic teams presenting their summer research over the 3 day competition at MIT. My question for you is, if you’re not at the Jamboree hearing the suggestions of “Check out Harvard’s iGarden”, or “Check out Cambridge reading in the dark by a jug of luminescent bacteria”, how are you supposed to find all the best stuff? My answer is – read this blog.

A bit about me: I was an undergraduate on the Brown iGEM 2007 team, we worked on making a bacteria that would detect lead in a water sample and then glow. After graduating in 2008, I was a judge for the Foundational Advance track in 2009, and the Software track in 2010.
And a necessary disclaimer — iGEM is a magical organization run by a sliver of extremely dedicated staff, and many many volunteers. I am one of those volunteers. The opinions expressed here are mine and do not represent the opinions of iGEM Headquarters in any way.
In 2008 I missed iGEM and tried to filter through some of the 100+ wikis. That takes a long time to read through and you can’t ask the teams questions! Because of this, I’m putting together this set of blog posts over the next week to share the events of iGEM 2010.
First, let’s talk about Alberta’s BioBytes project. Building DNA is too hard. Are you learning to reprogram E. Coli by putting new DNA into them? In 2007 during my first experience with iGEM, cloning took us 1 month to learn — granted, we were starting from almost zilch wetlab experience and were still getting our lab set up. How about sticking pieces of DNA together – ligation? We spent the last month of our summer on that and never got it to work. I’d be content if the answer was that we were an outlier except as a judge for iGEM in 2009 and 2010 I see several teams falling into the same ruts, and that’s because biology is still hard. Really hard.
Alberta’s project is elegant. Let’s make it easier to build DNA and put it in a cell. What might take a newbie 3 months of daily lab work to tackle, Alberta brought in 5 high school students and they did it in an afternoon – 45 minutes if I recall.
Jumping off of their work done in 2009 to make a rapid way to assemble DNA (earning them the Foundational Advance award), Alberta built a system which allows for the rapid assembly of parts using simple components. It doesn’t even need a “real” pipette to move liquids around! The first byte anchors a small piece of DNA to a magnetic microbead. This serves as the structure upon which each successive “byte” is added — see the diagram below. Wait a few minutes (that’s all you need for ligation), wash with buffer to removes any excess DNA, and then add your next part.
It works and their documentation is clean and simple (lots of gel electrophoresis). I’ve given you a good summary here, now go read the rest!
Learn more: Alberta put together a sweet “product” website

And Wiki, start with their methods page:

Thank you! 202%

Thank you so much for your overwhelming support for the OpenPCR project. We raised 202% of our goal, thanks to the massive support of 158 people that contributed financially and the hundreds of people that helped get the word out on Twitter, Facebook, blogs, and the nightly news!

One point I want to highlight — there are other biotech innovators like Josh and I and they need your support! Josh and I are part of a group called BioCurious, a community biotech lab starting up in San Francisco. BioCurious is trying to raise $30,000 in order to open their doors to dozens of innovators. As a supporter for BioCurious, you will be helping to start a major innovation engine, spurring education, public understanding, and entrepreneurship in biotech. Check out BioCurious at:

www.biocurious.org/kickstarter

And, if you’re in the Bay Area, come by for a meetup: www.meetup.com/biocurious

Best,

Tito and Josh